<html><head><title>NA12878.ga2.exome.1.fq_pairs_R1_sorted.fastq.gz_pairs_R1.fastq.gz FastQC Report</title><style type="text/css">
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</style></head><body><div class="header"><div id="header_title"><img src="" alt="FastQC"/>FastQC Report</div><div id="header_filename">Mon 15 Jan 2018<br/>NA12878.ga2.exome.1.fq_pairs_R1_sorted.fastq.gz_pairs_R1.fastq.gz</div></div><div class="summary"><h2>Summary</h2><ul><li><img src="" alt="[PASS]"/><a href="#M0">Basic Statistics</a></li><li><img src="" alt="[PASS]"/><a href="#M1">Per base sequence quality</a></li><li><img src="" alt="[FAIL]"/><a href="#M2">Per tile sequence quality</a></li><li><img src="" alt="[PASS]"/><a href="#M3">Per sequence quality scores</a></li><li><img src="" alt="[WARNING]"/><a href="#M4">Per base sequence content</a></li><li><img src="" alt="[WARNING]"/><a href="#M5">Per sequence GC content</a></li><li><img src="" alt="[PASS]"/><a href="#M6">Per base N content</a></li><li><img src="" alt="[WARNING]"/><a href="#M7">Sequence Length Distribution</a></li><li><img src="" alt="[WARNING]"/><a href="#M8">Sequence Duplication Levels</a></li><li><img src="" alt="[PASS]"/><a href="#M9">Overrepresented sequences</a></li><li><img src="" alt="[PASS]"/><a href="#M10">Adapter Content</a></li></ul></div><div class="main"><div class="module"><h2 id="M0"><img src="" alt="[OK]"/>Basic Statistics</h2><table><thead><tr><th>Measure</th><th>Value</th></tr></thead><tbody><tr><td>Filename</td><td>NA12878.ga2.exome.1.fq_pairs_R1_sorted.fastq.gz_pairs_R1.fastq.gz</td></tr><tr><td>File type</td><td>Conventional base calls</td></tr><tr><td>Encoding</td><td>Sanger / Illumina 1.9</td></tr><tr><td>Total Sequences</td><td>80761753</td></tr><tr><td>Sequences flagged as poor quality</td><td>0</td></tr><tr><td>Sequence length</td><td>76-101</td></tr><tr><td>%GC</td><td>48</td></tr></tbody></table></div><div class="module"><h2 id="M1"><img src="" alt="[OK]"/>Per base sequence quality</h2><p><img class="indented" src="" alt="Per base quality graph" width="825" height="600"/></p></div><div class="module"><h2 id="M2"><img src="" alt="[FAIL]"/>Per tile sequence quality</h2><p><img class="indented" src="" alt="Per base quality graph" width="825" height="600"/></p></div><div class="module"><h2 id="M3"><img src="" alt="[OK]"/>Per sequence quality scores</h2><p><img class="indented" src="" alt="Per Sequence quality graph" width="800" height="600"/></p></div><div class="module"><h2 id="M4"><img src="" alt="[WARN]"/>Per base sequence content</h2><p><img class="indented" src="" alt="Per base sequence content" width="825" height="600"/></p></div><div class="module"><h2 id="M5"><img src="" alt="[WARN]"/>Per sequence GC content</h2><p><img class="indented" src="" alt="Per sequence GC content graph" width="800" height="600"/></p></div><div class="module"><h2 id="M6"><img src="" alt="[OK]"/>Per base N content</h2><p><img class="indented" src="" alt="N content graph" width="825" height="600"/></p></div><div class="module"><h2 id="M7"><img src="" alt="[WARN]"/>Sequence Length Distribution</h2><p><img class="indented" src="" alt="Sequence length distribution" width="800" height="600"/></p></div><div class="module"><h2 id="M8"><img src="" alt="[WARN]"/>Sequence Duplication Levels</h2><p><img class="indented" src="" alt="Duplication level graph" width="800" height="600"/></p></div><div class="module"><h2 id="M9"><img src="" alt="[OK]"/>Overrepresented sequences</h2><p>No overrepresented sequences</p></div><div class="module"><h2 id="M10"><img src="" alt="[OK]"/>Adapter Content</h2><p><img class="indented" src="" alt="Adapter graph" width="800" height="600"/></p></div></div><div class="footer">Produced by <a href="http://www.bioinformatics.babraham.ac.uk/projects/fastqc/">FastQC</a>  (version 0.11.6)</div></body></html>